hpotk.ontology.load.obographs package

hpotk.ontology.load.obographs.load_ontology(file: IO | str, term_factory: ObographsTermFactory[Term] = <hpotk.ontology.load.obographs._factory.TermFactory object>, graph_factory: GraphFactory = <hpotk.graph._factory.CsrIndexedGraphFactory object>, prefixes_of_interest: Set[str] = {'HP'}) → Ontology[source]

hpotk.ontology.load.obographs.load_minimal_ontology(file: IO | str, term_factory: ObographsTermFactory[MinimalTerm] = <hpotk.ontology.load.obographs._factory.MinimalTermFactory object>, graph_factory: GraphFactory = <hpotk.graph._factory.CsrIndexedGraphFactory object>, prefixes_of_interest: Set[str] = {'HP'}) → MinimalOntology[source]

class hpotk.ontology.load.obographs.TermFactory[source]

Bases: ObographsTermFactory[Term]

create_term(term_id: TermId, node: Node) → Term | None[source]

Create MinimalTerm or a more specific instance for TermId and Node

The term may not be created at the discretion of the factory, in which case None is returned.

class hpotk.ontology.load.obographs.MinimalTermFactory[source]

Bases: ObographsTermFactory[MinimalTerm]

create_term(term_id: TermId, node: Node) → MinimalTerm | None[source]

Create MinimalTerm or a more specific instance for TermId and Node

The term may not be created at the discretion of the factory, in which case None is returned.