hpo-toolkit

Contents:

  • Setup
  • User guide
  • API reference
    • hpotk package
      • TermId
      • MinimalTerm
      • Term
      • OntologyGraph
      • GraphAware
      • MinimalOntology
      • Ontology
      • OntologyStore
      • OntologyType
      • configure_ontology_store()
      • Subpackages
        • hpotk.algorithm package
        • hpotk.annotations package
        • hpotk.constants package
        • hpotk.graph package
        • hpotk.model package
        • hpotk.ontology package
        • hpotk.store package
        • hpotk.util package
        • hpotk.validate package
hpo-toolkit
  • API reference
  • hpotk package
  • hpotk.algorithm package
  • View page source

hpotk.algorithm package

Subpackages

  • hpotk.algorithm.similarity package
    • calculate_ic_for_annotated_items()
    • AnnotationIcContainer
    • SimpleAnnotationIcContainer
    • SimilarityContainer
    • precalculate_ic_mica_for_hpo_concept_pairs()
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